It’s a whole lot easier to solve problems when you can actually see what you’re working with. Microscopes let scientists and physicians do just that. Today, we’re talking about how microscopes are used in research, diagnosis, and even to treat cancer.
Getting a Closer Look
It’s a whole lot easier to study and understand something when you can actually see it. No surprises there. What you might find surprising is that we’ve been doing that for a couple of thousand years. The use of lenses to magnify something small seems to have started all the way back in ancient Rome. The oldest glass lenses that we’ve discovered so far were made over 2,000 years ago. They were more similar to modern-day magnifying glasses than microscopes. Just a simple piece of curved glass used to bend light and magnify something small. These early lenses were capable of making images appear 2 to 20 times larger.
As technology advanced throughout the centuries, microscopes continued to evolve. By the mid 1600s, microscopes were capable of magnifying up to 270 times! This allowed scientists to observe the first-ever living cells. Today, the same principle of getting a closer look is one of the most powerful tools we have in cancer research.
The Modern Light Microscope
Nowadays, modern microscopes don’t even rely on traditional white light: we use lasers. Certain molecules emit light when they’re hit with a laser. These are called fluorophores. We can modify these fluorophores to attach to specific structures in a cell, like a specific protein. With modern biological technologies, we can even genetically modify cells so that they have these fluorophores built into their natural proteins! So when cells have these fluorophores, we can blast them with a laser. Then, we can collect all of the light that’s emitted by the fluorophores. This lets us track specific targets in our cell with incredible resolution.
I like to think of it like going to a concert with your friends. If you got separated and didn’t know where they were, it would be nearly impossible to pick them out of a crowd. But if you gave them each a hat with a strobe light on top, that would make it a whole lot easier. You could pick out each of your friends and know exactly where they are.
This lets us look at more details than just the size and shape of a cell. We can look at specific organelles, which are like the organs of a cell. We can look at different proteins and where they are in the cell. We can also use multiple fluorophores at the same time to watch different proteins interact. The most advanced microscopes are capable of something called “super-resolution microscopy”.
Super-resolution microscopy is so advanced that it can track a single particle in a cell, within a several-nanometre range. Just for scale, there are one billion nanometres in one metre…
Now, that’s pretty good, but it still has its limits. We still lose some information about the details of smaller structures. So… what if I want an even closer look?
Forget Laser Beams - Now We Use Electron Beams
The microscopes we’ve talked about so far use light either in the form of lasers or in the form of regular white light. If we want an even better picture than with light microscopes, we have to turn to electron microscopes. Electron microscopes shoot a beam of electrons at a cell and detect them as they pass through or reflect off the surface. We can then reconstruct an image based on how the electrons were reflected or how their path was altered as they passed through the cell.
Electron microscopes can give us accuracy in the 0.2 nanometre range… They can magnify by 50 million times.
That sort of scale is nearly incomprehensible. If you magnified a strand of hair that much, it would appear roughly five kilometres wide. This gives us high enough magnification that we can begin to see the physical characteristics of single proteins, much less organelles.
But How Are These Tools Used in Cancer Care?
The use of microscopes in a clinical setting isn’t as common as in a lab, but they’re still an essential tool for diagnosis and even treatment. They’re most often used to help diagnose cancer. Cancer cells appear quite different compared to our healthy cells. They have different shapes and sizes, and they also express certain markers or proteins that our healthy cells don’t. When clinicians take a biopsy, they take a small piece of tissue. That tissue can be sliced and stained with fluorophores that attach to cancer-specific targets. They can then be looked at under a microscope. If they stain positively, we know that there are cancer cells present.
Microscopes can also be used to treat cancer directly. Surgery requires steady hands and exceptional precision. Microscopes can help magnify the surgical site. This makes it easier for a surgeon to remove tumour tissue while preserving healthy tissue in the surroundings. Microscopes are also used in a process called Mohs surgery. This process is most commonly performed on skin cancer. It combines the use of microscopes for diagnosis with surgery. A surgeon will remove a thin piece of tissue at a time. Each time, the removed piece is immediately stained and looked at under a microscope. If there are still cancer cells in the tissue, the surgeon removes another layer. Then, rinse and repeat until there’s no more cancer. This helps surgeons guarantee the removal of cancer while limiting excessive tissue removal.
What’s more intriguing are some of the proposed uses for microscopes to help inform treatment regimens. One of the challenges to cancer care is picking the right treatment. We have a lot of tools at our disposal, so knowing which to choose can be hard. Some clinicians and scientists have proposed using microscopes to help inform that decision, ensuring the correct choice of treatment as soon as possible. Intravital microscopy uses fluorophores, those glowing molecules, injected into the blood. A microscope is then used to observe the fluorophores in the blood so we can reconstruct an image of the blood vessels. This could be used to look at the blood supply to a tumour.
Systemic therapies, like chemotherapy, are distributed through the bloodstream. That’s how they make their way to hard-to-reach tumours.
If intravital microscopy finds little to no blood supply at the tumour site, chemotherapy wouldn’t even be able to reach the cancer. This could tell us to stray away from chemotherapy, for example.
Getting a close look at what you’re studying makes a lot of sense. We’ve been perfecting this technique since ancient Rome, where simple lenses were used to make objects appear larger. Nowadays, we use lasers and electron beams to reconstruct images at up to 50 million times magnification. These tools let us dive into a subcellular level in cancer, looking at how proteins interact or how the cell changes in response to treatment. They tell us how cancer works, which helps scientists make discoveries and create new treatments. They’re also a powerful tool in the clinic; they’re essential to cancer diagnosis and even some treatments. They can be used to help ensure treatments are as effective and safe as possible. Getting a closer look is a simple principle, but it’s one of the most powerful tools we have against cancer.
I hope you learned a little something this week, but next week we’re taking a closer look at a wild new way to kill cancer: molecular jackhammers.
See you next week!
Featured Photo

This week’s featured photo comes from PhD candidate Anastasia Roemer. Ana studies the physical organization of our DNA and how that alters the dynamics of the nucleus, the compartment in which our DNA is stored. This, in turn, impacts how genes are expressed, a cell’s structural properties, and even how cells move. These are all key features involved in cancer’s ability to spread and migrate. To study that, Ana looks at neurons under the microscope, which are featured in the picture above. Neurons are helpful for her project as they dramatically reorganize their DNA when they express certain genes involved in memory formation. This image is a super-resolution picture of rat neurons. The yellow colouration is used to identify mature neurons. The pink is DNA. With these pictures, Ana can actually observe physical changes in the DNA and nucleus, and correlate that with changes in gene expression. If you want to see more neurons interacting with immune cells, click “read online” in the top right and take a look at this issue’s cover photo. Thank you to Ana for sharing her pictures with us!
If you missed last week’s letter, you can read “A Dangerous Game of Hide and Seek” to learn a little more about how cancer evades the immune system.
References
Noble, C. A., Biesemier, A. P., McClees, S. F., Alhussain, A. M., Helms, S. E., & Brodell, R. T. (2025). The history of the microscope reflects advances in science and medicine. Seminars in Diagnostic Pathology, 42(2), 150831. https://doi.org/10.1053/J.SEMDP.2024.01.002
Ancient Optical Lenses. (n.d.). Retrieved May 19, 2026, from https://www.ancient-cinema.org/index.php/stories/77-ancient-optical-lenses
7 Types of Light Microscopes and How To Use Them – AmScope. (n.d.). Retrieved May 19, 2026, from https://amscope.com/blogs/news/7-types-of-light-microscopes-and-how-to-use-them?srsltid=AfmBOooEmYmpNU7K6ZdiGuISNnpGHghCgBH5czu_NlzdjdPOet_o6cNM
Sanderson, M. J., Smith, I., Parker, I., & Bootman, M. D. (2014). Fluorescence Microscopy. Cold Spring Harbor Protocols, 2014(10), pdb.top071795. https://doi.org/10.1101/PDB.TOP071795
Kaniyala Melanthota, S., Kistenev, Y. v., Borisova, E., Ivanov, D., Zakharova, O., Boyko, A., Vrazhnov, D., Gopal, D., Chakrabarti, S., Shama Prasada, K., & Mazumder, N. (2022). Types of spectroscopy and microscopy techniques for cancer diagnosis: a review. Lasers in Medical Science, 37(8), 3067. https://doi.org/10.1007/S10103-022-03610-3
Mohs Surgery. (n.d.). Retrieved May 19, 2026, from https://www.skincancer.org/treatment-resources/mohs-surgery/
Visualizing tumor blood vessels - NCI. (n.d.). Retrieved May 19, 2026, from https://www.cancer.gov/news-events/cancer-currents-blog/2016/intravital-microscopy

